To disable SFC(WFP), then either sfc_os.dll/sfc.dll is patched to disable SFC(with or without needing a reg-entry), or sfcfiles.dll is wiped clean so SFC is enabled, but no files is protected/backed-up.
nLite currently patches sfc_os.dll/sfc.dll from '83 F8 9D 75 07 8B C6' to 'B8 9D FF FF FF 90 90'
I haven't checked if nLite also modifies other files additionally(sfcfiles.dll), but the above is all that's needed to fully disable SFC.
Then nLite also sets this reg-entry :
CODE
[HKEY_LOCAL_MACHINE\SOFTWARE\Microsoft\Windows NT\CurrentVersion\Winlogon]
"SFCDisable"=dword:FFFFFF9D
...But that reg-entry is useless in our case, as it only needs to be applied when patching sfc_os.dll/sfc.dll from '83 F8 9D 75 07 8B C6' to '83 F8 9D 75 07 90 90' and not in the better(full) way which nLite does.