Rest of the ones I applied seem to be fine.
Also (using RC3):
I told Nlite to keep briefcase, but it didn't. I may have wiped a dependency. Any suggestions?
The MS Update icon is still in the start menu, even though I told it not to.
IE still creates quicklaunch shortcuts (which I delete via batch file).
1 more: The color scheme is still blue even though I specified silver
None of these are a big deal (except for the hotfix issue) - just figured I'd mention them. I can live without briefcase, although it's handy at times.
Worked around the hotfix by using the integrate switch - the real problem is that it appears to work.
Oh - the hotfixes were applied on top of Ryans integrated pack, in case that's important.