Best thing to do is revert the registry settings to the Windows 98SE default, uninstall KernelEx, reboot, reinstall KernelEx, go to the offending application's executable or desktop shortcut, right-click it and find the Compatibility tab that you couldn't find previously and select Windows XP (or Windows 2000, by trial and error) from the dropdown list. Then try running that application.
Please note that in case of an installer that unpacks further executables, you may have to navigate to the unpacked folder (usually some weird name in the temporary directory - default is C:\Windows\Temp) and set compatibility to Windows XP for the unpacked exe too.
Good luck!



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